Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGVPAKKKQQQGERSRESILDATERLMATKGYAATSISDIRDACGLAPSSIYWHFGSKEGVLAAMMERGAQRFFAAIPTWDEAHGPVEQRSERQLT-ELVSL---QSQHPDFLRLFYLLSM---ERSQDPAVAAVVRRVRNTAIARFRDSITHLLPSDIPPGKADLVVAELTAFAVALSDGVYFAGHLE-PDTTDVERMYRRLRQALEALIPVLLEET
4W97 Chain:A ((6-196))
---------GQVNSRRGELLELAAAMFAERGLRATTVRDIADGAGILSGSLYHHFASKEEMVDELLRGFLDWLFARYRDIVDSTANP----LERLQGLFMASFEAIEHHHAQVVIYQDEAQRLASQPRFSYIEDRNKQQRKMWVDVLNQGIEEGYFRPDLD--VD----LVYRFIRDTT-WVSVRWYRPGGPL-TAQQVGQQYLAIVLGGIT------
General information:
TITO was launched using:
RESULT:
Template:
4W97.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70756 for 1266 contacts (-55.9/contact) +
2D Compatibility (PS) -20314 + (NN) -11427 + (LL) 2216
1D Compatibility (HY) -6800 + (ID) 1400
Total energy: -108481.0 ( -85.69 by residue)
QMean score : 0.375
(partial model without unconserved sides chains):
PDB file :
Tito_4W97.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4W97-query.scw
PDB file :
Tito_Scwrl_4W97.pdb
: