Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVVPIRIVGDPVLHTATTPVTVAADGSLPADLAQLIATMYDTMDAANGVGLAANQIGCSLRLFVYDCAADRAMTARR---RGVVINPVLETSEIPETMPDPDTDD-----EGCLSVPGESFPTGRAKWARVTGLDADGSPVSIEGTGLFARMLQHETGHLDGFLYLDRLIGRYARNAKRAVKSHGWGVPGLSWLPGEDPDPFGH
1VEY Chain:A ((1-157))
-SVRKILRMGDPILRKISEPVT--EDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVVGSEDNERYPGTPDVPERIILNPVIT----------PLTKDTSGFWEGCLSVPGMRGYVERPNQIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRL-----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1VEY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65746 for 1120 contacts (-58.7/contact) +
2D Compatibility (PS) -16251 + (NN) -4042 + (LL) 1532
1D Compatibility (HY) -12800 + (ID) 2900
Total energy: -100207.0 ( -89.47 by residue)
QMean score : 0.426
(partial model without unconserved sides chains):
PDB file :
Tito_1VEY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VEY-query.scw
PDB file :
Tito_Scwrl_1VEY.pdb
: