Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDHKVPFNRPYMTGRELAYIAEAHSCGHLAGDGPFTRRSHAWLEQQTGCRKALLTPSCTAALEMMALLLDIEEGDEVILPSYTFVSTANAFVLRGGVPVFVDIRPDTLNIDETRIVDAITPRTKAIVPVHYAGVACEMDAIMKIATHHNLAVVEDAAQGAMASYRGRALGSIGDLGALSFHETKNVI-SGEGGALLVNS
4ZAH Chain:A ((20-221))
---HMIPFNAPPVVGTELDYMQSAMGSGKLCGDGGFTRRCQQWLEQRFGSAKVLLTPSCTASLEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDVRPDTMNIDETLIEAAITDKTRVIVPVHYAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTIGHIGCFSFHETKNYTAGGEGGATLI--
General information:
TITO was launched using:
RESULT:
Template:
4ZAH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128059 for 1554 contacts (-82.4/contact) +
2D Compatibility (PS) -21021 + (NN) -8550 + (LL) -4
1D Compatibility (HY) -20400 + (ID) 6600
Total energy: -184634.0 ( -118.81 by residue)
QMean score : 0.392
(partial model without unconserved sides chains):
PDB file :
Tito_4ZAH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ZAH-query.scw
PDB file :
Tito_Scwrl_4ZAH.pdb
: