Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTNSTDGRADGRLRVVVLGSTGSIGTQALQVIADN---PDRFEVVGLAAGGAHLDTLLRQRAQTGVTNIAVAD----EHAAQRVGDIPYH------GSDAATRLVEQTEADVVLNALVGALGLRPTLAALKTGARLALANKESLVAGGSLV---LRAARPGQIVPVDSEHSALAQCLRGGTP-------------DEVAKLVLTASGGPFRGWSAADLEHVTPEQAGAHPTWSMGPMNTLNSASLVNKGLEVIETHLLFGIPYDRIDVVVHPQSIIHSMVTFIDGSTIAQASPPDMKLPISLALGWPRRVSGAAAACDFHTASSWEFEPLDTDVFPAVELARQAGVAGGCMTAVYNAANEEAAAAFLAGRIGFPAIVGIIADVLHAADQWAVEPATVD---DVLDAQRWARERAQRAVSGMASVAIASTAKPGAAGRHASTLERS |
4GAE Chain:A ((16-416)) | ------------INVAIFGSTGSIGTNALNIIRECNKIENVFNVKALYVNKS-VNELYEQAREFLPEYLCIHDKSVYEELKELVKNIKDYKPIILCGDEGMKEICSSNSIDKIVIGIDSFQGLYSTMYAIMNNKIVALANKESIVSAGFFLKKLLNIHKNAKIIPVDSEHSAIFQCLDNNKVIKTKCLQDNFSKINNINKIFLCSSGGPFQNLTMDELKNVTSENALKHPKWKMGKKITIDSATMMNKGLEVIETHFLFDVDYNDIEVIVHKECIIHSCVEFIDKSVISQMYYPDMQIPILYSLTWPDRIKTNLKPLDLAQVSTLTFHKPSLEHFPCIKLAYQAGIKGNFYPTVLNASNEIANNLFLNNKIKYFDISSIISQVLESFNSQKVSENSEDLMKQILQIHSWAKDKA------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GAE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -210771 for 3146 contacts (-67.0/contact) +
2D Compatibility (PS) -40149 + (NN) -17394 + (LL) 2160
1D Compatibility (HY) -36000 + (ID) 6850
Total energy: -309004.0 ( -98.22 by residue)
QMean score : 0.461
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