Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSGDKLLSELGYKLGRTIGEGSYSKVKVATSKKYKGTVAIKVVDRRRAPPDFVNKFLP---RELSILRGVRHPHIVHVFEFIEVCNGKLYIVME-AAATDLLQAVQRNGRIPGVQARDLFAQIAGAVRYLHDHHLVHRDLKCENVLLSPDERR--VKLTDFGFGRQAHGYPDLSTTYCGSAAYASPEVLLGI---PYDPKKYDVWSMGVVLYVMVTGCMPFDDSDIAGLPRRQKRGVLY---PE-GLELSERCKALIAELLQFSPSARPSAGQVARNCWLRAGDSG |
4BDG Chain:A ((18-288)) | -----------YIMSKTLGS---GEVKLAFERKTCKKVAIKIISK-------------NVETEIEILKKLNHPCIIKIKNFFDAED--YYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSK-ILGETSLMRTLCGTPTYLAPEVLVSVGTAGYN-RAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRHPWLQDEDMK |
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General information:
TITO was launched using:
| RESULT:
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Template: 4BDG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -152168 for 1708 contacts (-89.1/contact) +
2D Compatibility (PS) -25538 + (NN) -9685 + (LL) 656
1D Compatibility (HY) -22400 + (ID) 4350
Total energy: -213485.0 ( -124.99 by residue)
QMean score : 0.395
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