Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLVLAVLLTVAAADSGISPRAVWQFRKMIKCVIPGSDPFLEYNNYGCYCGLGGSGTPVDELDKCCQTHDNCYDQAKKLDSCKFLLDNPYTHTYSYSCSGSAITCSSKNKECEAFICNCDRNAAICFSKA--PYNKAHKNLDTKKYCQS
2G58 Chain:A ((1-117))
----------------------SLLEFGKMILEET-GKLAIPSYSSYGCYCGWGGKGTPKDATDRCCFVHDCCYGNL---PDC-----NPKSDRYKYKRVNGAIVCE-KGTSCENRICECDKAAAICFRQNLNTYSKKYMLYPDF-LCKG
General information:
TITO was launched using:
RESULT:
Template:
2G58.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59504 for 846 contacts (-70.3/contact) +
2D Compatibility (PS) -12565 + (NN) -11020 + (LL) 2888
1D Compatibility (HY) -9200 + (ID) 2400
Total energy: -91801.0 ( -108.51 by residue)
QMean score : 0.423
(partial model without unconserved sides chains):
PDB file :
Tito_2G58.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2G58-query.scw
PDB file :
Tito_Scwrl_2G58.pdb
: