Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKP
2J1L Chain:A ((32-163))
VRSVKVVLVGDGGCGKTSLLMVFAD-------TPTVFERYMVNLQVKGKPVHLHIWDT---------------DASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRN----
General information:
TITO was launched using:
RESULT:
Template:
2J1L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70367 for 701 contacts (-100.4/contact) +
2D Compatibility (PS) -11680 + (NN) -1345 + (LL) 724
1D Compatibility (HY) -14400 + (ID) 2400
Total energy: -99468.0 ( -141.89 by residue)
QMean score : 0.391
(partial model without unconserved sides chains):
PDB file :
Tito_2J1L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J1L-query.scw
PDB file :
Tito_Scwrl_2J1L.pdb
: