Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSLVACECLPSPGLEPEPCSRARSQAHVYLEQIRNRVALGVPDMTKRDYLVDAATQIRLALERDVSEDYEAAFNHYQNGVDVLLRGIHVDPNKERREAVKLKITKYLRRAEEIFNCHLQRPLSSGASPSAGFSSLRLRPIRTLSSAVEQLRGCRVVGVIE-----KVQLVQDPATGGTFVVKSLPRCHMVSR--------ERL--TIIPHGVPYMTKLLRYFVSEDSIFLHLEHVQGGTLWSHLLSQAHSRHSGLSSGSTQERMKAQLNPHLNLLTPARLPSGHAPGQDRIALEPPRTSPNLLLAGEAPSTRPQREAEGEPTARTSTSGSSDLPKAPGGHLHLQARRAGQNSDAGPPRGLTWVPEGAGPVLGGCGRGMDQSCLSADGAGRGCGRATWSVREEQVKQWAAEMLVALEALHE-QGVLCRDLHPGNLLLDQAGHIRLTYFGQWSEVEP-Q--CCGEAVDNLYSAPEVGGISELTEACDWWSFGSLLYELLTGMALSQSHP-SGI---QAHTQLQLPEWLSRPAASLLTELLQFEPTRRLGMGEGGVSKLKSHPFFSTIQWSKLVG |
| 4GV1 Chain:A ((7-277)) | -----------------------------------------------------------------------------------------------------------------------------------------------------MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRH--PFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRER-----------------------------------------------------------------------------------------------------------------------------------------------------VFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVWQHVYE |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GV1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -160272 for 1913 contacts (-83.8/contact) +
2D Compatibility (PS) -26376 + (NN) -12889 + (LL) 13832
1D Compatibility (HY) -18800 + (ID) 3800
Total energy: -208305.0 ( -108.89 by residue)
QMean score : 0.395
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