Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHNDLKEVLLTEEDIQNICKELGAQLTKDYQGKPLVCVGILKGSAMFMSDLIKRIDT---------HLSIDFMDVSSYHGGTESTGEVQIIK-DLGSSIENKDVLIIEDILETGTTLKSITELLQSRKVNSLEIVTLLDKPNRRKADIEAKYVGKKIPDEFVVGYGLDYRELYRNLPYIGTLKPEVYSN
4RAN Chain:B ((30-204))
---DLERVFIPHGLIMDRTERLARDVMKEMGGHHIVALCVLKGGYKFFADLLDYIKALNRNSDRSIPMTVDFIR----------------IGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNPKMVKVASLLVKRTPRSVGYKPDFVGFEIPDKFVVGYALDYNEYFRDLNHV----------
General information:
TITO was launched using:
RESULT:
Template:
4RAN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110260 for 1127 contacts (-97.8/contact) +
2D Compatibility (PS) -16049 + (NN) -1065 + (LL) 988
1D Compatibility (HY) -17600 + (ID) 2550
Total energy: -146536.0 ( -130.02 by residue)
QMean score : 0.543
(partial model without unconserved sides chains):
PDB file :
Tito_4RAN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RAN-query.scw
PDB file :
Tito_Scwrl_4RAN.pdb
: