Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKTKIMGILNVTPDSFSDGGKFNNVETAINRVKAMIDEGADIIDVGGVSTRPGHEMVTLEEELNRVLPVVEAIVGFDVKISVDTFRSEVAEACLKLGVDMINDQWAGLYDHRMFQIVAKYDAEIILMHNGNGNRD-EPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPGIGFAKTRNEEAEVMARLDELVATEYPVLLATSRKRFTKEMMGYDTTPVERDEVTAATTAYGIMKGVRAVRVHNVELNAKLAKGIDFLKENENARHNLS
1AD1 Chain:A ((1-264))
-TKTKIMGILNVTPDSFSDGGKFNNVESAVTRVKAMMDEGADIIDVGGVSTRPGHEMITVEEELNRVLPVVEAIVGFDVKISVDTFRSEVAEACLKLGVDIINDQWAGLYDHRMFQVVAKYDAEIVLMHN-GNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPGIGFAKTRNEEAEVMARLDELVATEYPVLLATSRKRFTKEMMGYDTTPVERDEVTAATTAYGIMKGVRAVRVHNVELNAKLAKGIDFLKENENA-RHN-
General information:
TITO was launched using:
RESULT:
Template:
1AD1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117433 for 2218 contacts (-52.9/contact) +
2D Compatibility (PS) -29590 + (NN) -24526 + (LL) 108
1D Compatibility (HY) -35600 + (ID) 12300
Total energy: -219341.0 ( -98.89 by residue)
QMean score : 0.801
(partial model without unconserved sides chains):
PDB file :
Tito_1AD1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AD1-query.scw
PDB file :
Tito_Scwrl_1AD1.pdb
: