Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKIFINGFGRIGRCVLRAILERNDTNPQLEVIGINDP-ANWEILAYLLEHDSTHGLLNKEVRYSNGKLIIGSLEIPVFNSIK------DLKGVGVIIECSGKFLEPKTLENYLLLGAKKVLLSAPFMGEYDEKQYPTLVYGVNHFLY-QNQAIVSNASCTTNAIAPICAILDKAFSIKEGMLTTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHSVRVPSLDVSMIDLSLFLEKKALKDPINDLLITASKGTLKGVLEIDLKERVSSDFISNPNSVIIAPDLTFTL-ENMVKIMGWYDNEWGYSNRLVDMAQFMYHY |
1SZJ Chain:R ((2-327)) | -KIGINGFGRIGRLVLRAALEMG-----AQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIISAP------SADAPMFVCGVNLEKYSKDMKVVSNASCTTNCLAPVAKVLHENFEIVEGLMTTVHAVTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELDGKLTGMAFRVPTPNVSVVDLTVRLGKECSYDDIKAAMKAASEGPLQGVLGYTEDDVVSCDFTGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLIKHMQKV |
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General information:
TITO was launched using:
| RESULT:
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Template: 1SZJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -226939 for 2730 contacts (-83.1/contact) +
2D Compatibility (PS) -33652 + (NN) -4545 + (LL) 372
1D Compatibility (HY) -24800 + (ID) 6800
Total energy: -296364.0 ( -108.56 by residue)
QMean score : 0.483
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