Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKEGFAVIGLGRFGGSICRSLVEQGMEVLAIDSDEERVNEYMSIATHAVIANSTDENALRQLGIRNFEHVIVAIGEDIQSSILTTLILKEMGVKYVTAKATNDKHAKLLDKIGADRVVHPERDMGRRIAHYIVSKNMLDYLELSDEYSLVEISVSDPRFLGKSLVDLDFRNSFGVNIVGIKKDKQMIITPEANDVLHEGDILIVIGSDDDIERLQEKIQ
1LSU Chain:A ((11-144))
--KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKIGADRIIHPEKDMGVKIAQSLSDEN-----------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1LSU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107826 for 1042 contacts (-103.5/contact) +
2D Compatibility (PS) -14260 + (NN) -1352 + (LL) 5948
1D Compatibility (HY) -13200 + (ID) 4100
Total energy: -134790.0 ( -129.36 by residue)
QMean score : 0.699
(partial model without unconserved sides chains):
PDB file :
Tito_1LSU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LSU-query.scw
PDB file :
Tito_Scwrl_1LSU.pdb
: