Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKVLTFENISYWYKTK--DESILNDINYDFEAGVFYTVVGSSGSGKTTFLSLAGGLDTQKEGDIYYKGSSLKSIGLQQF---RNKYVSIVFQSYNLLTYMTALQNVTTAMEITHV---NQPDKKAFALSMLEKVGITEEMARQKVLTLSGGQQQRVSIARALCCETELIVADEPTGNLDERTSKEVVTLFQDLAHKEGKCVIMVTHDPEIAKVSDVKLTLKNGSFVEKKQSMNSLINS
3TIF Chain:A ((2-230))
----VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR------
General information:
TITO was launched using:
RESULT:
Template:
3TIF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116057 for 1796 contacts (-64.6/contact) +
2D Compatibility (PS) -24037 + (NN) -5526 + (LL) 680
1D Compatibility (HY) -17200 + (ID) 3650
Total energy: -165790.0 ( -92.31 by residue)
QMean score : 0.537
(partial model without unconserved sides chains):
PDB file :
Tito_3TIF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TIF-query.scw
PDB file :
Tito_Scwrl_3TIF.pdb
: