Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIELVNVSKKIQDKLILEKVSLSIGAGEFIAVVGESGSGKTTLLNVIGHLDSKDSGQVIINEMEYQTKKEVMTLKKEVLGFIFQNYLLMENETVLENLSITG--GENRKLMIEHLE--EVGMDESYLAKKVYQ--------LSGGEKQRIAIVRILLKPFQLLLADEPTGNLDDKNKQKIIELFLALKKQGKTIVCVTHDPEISAKADRIIYIEGGEIR
3VX4 Chain:D ((51-246))
----------------LSDINLSIKKGSKVSLVGASGSGKTTLAKLIVNFYEPNKGIVRINGNDLKVIDKT-ALRRHISYLPQQAYVF--SGSIMDNLVLGAKEGTSQEDIIRACEIAEIRSDIEQMPQG-YQTELSDGAGISGGQKQRIALARALLTQAPVLILDAATSSLDILTEKKIISNLLQMTE--KTIIFVAHRLSISQRTDEVIVMDQGKI-
General information:
TITO was launched using:
RESULT:
Template:
3VX4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87606 for 1364 contacts (-64.2/contact) +
2D Compatibility (PS) -20405 + (NN) -11657 + (LL) 2548
1D Compatibility (HY) -15600 + (ID) 3150
Total energy: -135870.0 ( -99.61 by residue)
QMean score : 0.389
(partial model without unconserved sides chains):
PDB file :
Tito_3VX4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VX4-query.scw
PDB file :
Tito_Scwrl_3VX4.pdb
: