Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLLEKINETRDFLQAKGVTAPEFGLILGSGLGELAEEIENPIVVDYADIPNWGQSTVVGHAGKLVYGDLSGRKVLALQGRFHFYEGNTMEIVTFPVRIMRALACHSVLVTNAAGGIGYG--PGTLMLIKDHINVIG---TNPLIGENLEEFGPRFPDMSDAYTATYRQKAHQIAEKQNIK--LEEGVYLGVSGPTYETPAEIRAFQTMGAQAVGMSTVPEVIVAAHSGLKVLGISAITNFAA-GFQSEL--NHEEVVEVTQRIKEDFKGLVKSLVAEL
3FNQ Chain:A ((9-284))
---IENVKKVAHHIQKLTSIVPEIGIICGSGLGKLADGVKDKITIPYTKIPNFPQTS---HSGNLIFGTLSGRKVVVMQGRFHMYEGYSNDTVALPIRVMKLLGVKILMVSNAAGGLNRSLKLGDFVILKDHIYLPGLGLNNILVGPNQEAFGTRFPALSNAYDRDLRKLAVQVAEENGFGNLVHQGVYVMNGGPCYETPAECTMLLNMGCDVVGMSTIPEVVIARHCGIQVFAVSLVTNISVLDVESDLKPNHEEVLATGAQRAELMQSWFEKIIEKL
General information:
TITO was launched using:
RESULT:
Template:
3FNQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -169204 for 2303 contacts (-73.5/contact) +
2D Compatibility (PS) -28177 + (NN) -10188 + (LL) 648
1D Compatibility (HY) -28000 + (ID) 5450
Total energy: -240371.0 ( -104.37 by residue)
QMean score : 0.566
(partial model without unconserved sides chains):
PDB file :
Tito_3FNQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FNQ-query.scw
PDB file :
Tito_Scwrl_3FNQ.pdb
: