Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKHYQTIIIGAGAAGIGFGSAMQRLGLTNFLIIEKGHIGESFLRWPRTTQFITPSFTTNGFGFPDLNAVIPDTSPAFSFEKEHLSGVEYARYLQLVAAHYNLPIQNETSVLSIDKRDSLFVIKTSKGDFSADYLIMATGEFQNPNTIDIKGADLGMHYGQVDNFHIK-----SDNPFIIIGGNESACDALTHLVYLGNQVELYTDTFGRKESNPDPSISLSPLTKERLKHIQDHKKEYYSISEGKKAIEIKQIGKQYQVTFDDGSTAESFHKPILSTGFLNTCHLIDGIA-LFEYDKNQLPIVTEDDESTIVNNCFLIGPSLRQRDTIFCYIYKFRQRFVPVINHIAQREGIILDEDTLEFFKENQMYLDNLACCDVNCDC |
1XHC Chain:A ((9-297)) | ---SKVVIVGNGPGGFELAKQLSQ-TY-EVTVIDKEPVPYYSK--PMLSHYI----------------------A------GFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLIDRGRK--VVITEKGEVPYDTLVLATGA--RAREPQIKGKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG--------LDEELSNMIKDMLEE--TGVKFFLNSELLEANEE----GVLT-NSG-FIEGKVKICAIGIVPNVDL--ARRSGIHTG--RGILIDDNFR-TSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILKGEPRRYNFKFRSTVFKFGKLQIAIIGNTKGEGKW |
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General information:
TITO was launched using:
| RESULT:
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Template: 1XHC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -182066 for 2366 contacts (-77.0/contact) +
2D Compatibility (PS) -29991 + (NN) -7269 + (LL) 2072
1D Compatibility (HY) -7200 + (ID) 2200
Total energy: -226654.0 ( -95.80 by residue)
QMean score : 0.418
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