Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMLNKIYDWVDERLDITPMWRDIADHEVPEHVNPAHHFSAFVYCFGGLTFFVTVIQVLSGMFLTMYYVPDIKNAWESVYYLQNEVAFGQIVRGMHHWGASLVIVMMFLHTLRVFFQGAYKKPRELNWIVGVLIFFVMLGLGFTGYLLPWDMKALFATKVGLQIAEATPLIGTQVKTLLAGHPDIVGAQTLTRFFAIHVFFLPAALFGLMAAHFIMIRKQGISGPL
4OGQ Chain:A ((2-215))--ANVYDWFEERLEIQAIAEDVTSKYVPP-----HV--NIFYCLGGITLVCFLIQFATGFAMTFYYKPTVAEAYSSVQYIMNEVNFGWLIRSIHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVSGVILAVITVSFGVTGYSLPWDQVGYWAVKIVSGVPEAIPVVGVLISDLLRGG-SSVGQATLTRYYSAHTFVLPWLIAVFMLFHFLMIRKQGISGPL


General information:
TITO was launched using:
RESULT:

Template: 4OGQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 677 -114443 -169.04 -534.78
target 2D structure prediction score : 0.76
Monomeric hydrophicity matching model chain A : 0.84

3D Compatibility (PKB) : -169.04
2D Compatibility (Sec. Struct. Predict.) : 0.76
1D Compatibility (Hydrophobicity) : 0.84
QMean score : 0.295

(partial model without unconserved sides chains):
PDB file : Tito_4OGQ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4OGQ-query.scw
PDB file : Tito_Scwrl_4OGQ.pdb: