Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDQPWNANIHYDALLDAMVPLGTQCVLDVGCGDGLLAARLARR--------IPYVTAVDIDAPVLRRAQTRFAN-------APIRWLHADIMTAE-LPNAGFDAVVSNAALHHIEDTRTALSRLGGLVTPGGTLAVVTFVTPSL--RNGLWHLTSWVACGMANRVK-GKWEH-SAPIKWPPPQTLHELRSHVRA-LLPGACIRRLLYGR-VLVTWRAPV
4OBX Chain:A ((61-256))
---------------------TPLNFIDVAGGSGDIAFGLLDHAESKFGDTESTMDIVDINPDMLKEGEKRAMEQGKYFKDPRVRFLVSNGEKLEEIDSDSKDIYTVSFGIRNFTDIQKGLNTAYRVLKPGGIFYCLEFSKIENPLMDFAYQQWAKVLPVMGSMIANDYDSYQYLVESIERFPDQETFKSMIEKAGFKSAGYESLTFGICAIHWGIK--
General information:
TITO was launched using:
RESULT:
Template:
4OBX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125541 for 1313 contacts (-95.6/contact) +
2D Compatibility (PS) -19365 + (NN) -10100 + (LL) 1568
1D Compatibility (HY) -4000 + (ID) 1350
Total energy: -158788.0 ( -120.94 by residue)
QMean score : 0.402
(partial model without unconserved sides chains):
PDB file :
Tito_4OBX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4OBX-query.scw
PDB file :
Tito_Scwrl_4OBX.pdb
: