Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSKRPLRWLTEQITLAGMRPPISPQLLINRPAMQPVDLTGKRILLTGASSGIGAAATKQFGLHRA----VVVAVARRKDLLDAVADRITGDGGTAMSLPCDLSDMEAIDALVEDVEKRIGGIDILINNAGRSIRRPLAESLER-WHDVERTMVLNYYAPLRLIRGLAPGMLERGD-GHIINVATWGVLS-EASPLFSVYNASKAALSAVSRIIETEWGSQGVHSTTLYYPLVATPMIAPTKAYDGLPALTAAEAAEWMVTAARTRPVRIAPRVAVAVNALDSIGPRWVNALMQRRNEQLNP |
4Z9Y Chain:B ((3-193)) | --------------------------------LNSFDLQGKVALITGCDTGLGQGMA--IGLAQAGCDIVGVNIVEPKDTIE----KVTALGRRFLSLTADMSNVSGHAELVEKAVAEFGHVDILVNNAGIIRREDAIEFSEKNWDDV---MNLNIKSVFFMSQTVARQFIKQGKGGKIINIAS--MLSFQGGIRVPSYTASKSAVMGVTRLMANEWAKHGINVNAIAPGYMAT------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4Z9Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -118662 for 1430 contacts (-83.0/contact) +
2D Compatibility (PS) -19618 + (NN) -5015 + (LL) 8472
1D Compatibility (HY) -13600 + (ID) 3150
Total energy: -151573.0 ( -106.00 by residue)
QMean score : 0.539
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