Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MMDRIVMEVSRYRPEIESAPTFQAYEVPLTREWAVLDGLTYIKDHLDGTLSFRWSCRMGICGSSGMTINGDPKLACATFLADYLPGPVRVEPMRNFPVIRDLVVDISDFMAKLPSVKPWLVRHDEPPVEDGEYRQTPAELDAFKQFSMCINCMLCYSACPVYALDPDFLGPAAIALGQRYNLDSRDQGAADRRDVLAAADGAWACTLVGECSTACPKGVDPAGAIQRYKLTAATHALKKLLFPWGGG
1L0V Chain:B ((1-243))
AEMKNLKIEVVRYNPEVDTAPHSAFYEVPYDATTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRDYTDG-MKVEALANFPIERDLVVDMTHFIESLEAIKPYI-IGNSRTADQGTNIQTPAQMAKYHQFSGCINCGLCYAACPQFGLNPEFIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPKHVDPAAAIQQGKVESSKDFLIATLKPR---
General information:
TITO was launched using:
RESULT:
Template:
1L0V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132535 for 1916 contacts (-69.2/contact) +
2D Compatibility (PS) -24967 + (NN) -8659 + (LL) -464
1D Compatibility (HY) -22400 + (ID) 6050
Total energy: -195075.0 ( -101.81 by residue)
QMean score : 0.431
(partial model without unconserved sides chains):
PDB file :
Tito_1L0V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L0V-query.scw
PDB file :
Tito_Scwrl_1L0V.pdb
: