Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTQDGTWVDESDWQLDDSEIAESGAAPVVAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVCYDALWTGRRFVVQDTGGWEPNAKG-LQRLVAEQASVAMRTADAVILVVDAGVGATAADEAAARILLRSGKPVFLAANKVDSEKGE--SDAAAL-----WSLGLGEPHAISAMHGRGVADLLDGVLAALPEVGESASASGGPRRVALVGKPNVGKSSLLNKLAGDQRSVVHEAAGTTVDPVDSLIELGGDVWRFVDTAGLRRKVGQASGHEFYASVRTHAAIDSAEVAIVLIDASQPLTEQDLRVISMVIEAGRALVLAYNKWDLVDEDRRELLQREIDRELVQVRWAQRVNISAKTGRAVHKLVPAMEDALASWDTRIATGPLNTWLTEVTAATPPPVRGGKQPRILFATQATARPPTFVLFTTGFLEAGYRRFLERRLRETFGFDGSPIRVNVRVREKRAGKRR |
| 5DN8 Chain:A ((176-350)) | -----------------------EVGIKIAMIGRPNVGKSTLINRLLGEERVIVYD-------SIYIPFARNDENYTLIDTAGIRRRAKIQ--KFSMIKSLQAMHAADVVIFLLDARQGVTEQDLRLLNRIVEAGVSLIIAVNKWDGLNIEERDNVRNAIDRRMPFVDFARRYFISALHGTGVGKLFRAIQESYQS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 5DN8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -83107 for 1189 contacts (-69.9/contact) +
2D Compatibility (PS) -17518 + (NN) -8905 + (LL) 21104
1D Compatibility (HY) -10800 + (ID) 2300
Total energy: -101526.0 ( -85.39 by residue)
QMean score : 0.473
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