Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLRLVSPIKAFADGIVAVAIAVVLMFGLANTPRAVAADERLQF-TATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATR------------------ADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAALTS
3HA9 Chain:A ((36-187))
-----------------------------------EEVLEREASFSLTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYREISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMVMDDGSLVEKFNVRSIDYIVIMDKSSNVLYAG--TTP-SLGELESVIKSV--
General information:
TITO was launched using:
RESULT:
Template:
3HA9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79995 for 973 contacts (-82.2/contact) +
2D Compatibility (PS) -14673 + (NN) -7196 + (LL) 3456
1D Compatibility (HY) -9600 + (ID) 1350
Total energy: -109358.0 ( -112.39 by residue)
QMean score : 0.509
(partial model without unconserved sides chains):
PDB file :
Tito_3HA9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HA9-query.scw
PDB file :
Tito_Scwrl_3HA9.pdb
: