Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSPSPVRILFVDDEERILRSLAMQFRRH-YEVLTESDPRRALERLKTERIQVLVSDQRMPQMSGAELLAQARERYPETLRILLTGYSDLDAAVDALNDGGIFRYLTKPWNPQEMAFTLRQAAEIASRQGLPAPPAATL------------AAPLSVLLLDDDPETLDCVGAFCHAGGHRLLRARNLAEA-------LVWLNTEPVEVLVSDLKLAGEHTAPLLKSLAQAHPRLL-----SLVVTPFRD-----TQALLELINQAQIFRY-------------------LPKPIRRGLFEKGLKAAAEQALL----WRGRSLPEVDRLAEVPRDEREKERVGSLLGMLGRLRERLTA----------------------------------- |
| 1NY5 Chain:A ((1-384)) | -----MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGA-YDFLTKPCMLEEIELTINKAIEHRKLRKENELLRREKDLKEEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRER-KEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSCLV |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NY5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -85339 for 1984 contacts (-43.0/contact) +
2D Compatibility (PS) -32729 + (NN) -17841 + (LL) 48
1D Compatibility (HY) -15200 + (ID) 2800
Total energy: -153861.0 ( -77.55 by residue)
QMean score : 0.439
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