Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIPLIGQLYRNNNVVTSIHGRGLINRSVIAIMKAHRFARHRMADDAELSVHETFPILKAMSELKLGAASVDLGKMVAKFKAEGNGRSIEDFVKAELAEVVGKQNGDAREGTDVVLYGFGRIGRLLARILIEKTGGGDGLRLRAIVVRKGAENDL---VKRASLLRRDSVHGPFDGTITIDEENNTLTANGNLIQVIYSNDPASIDYTQYGIKNALLVDNTGKWRDAEGLGQHLKCPGIDRVVLTAPGKGALKNIVHGINHTDIGADDKIISAASCTTNAIVPVLKAVNDQYGIVNGHVETVHSYTNDQNLIDNFHKGSRRGRSAPLNMVITETGAATAAAKALPVLKGKLTGNAIRVPTPNVSMAILNLNLEKATTREEINEYLRQMAMHSDLQKQIDFVSSQEVVSTDFVGSRHAGVVDAEATICNDNRVV-LYVWYDNEFGYSCQVVRVMEDMAGVNPPAFPR |
| 3L0D Chain:A ((22-342)) | ------------------------------------------------------------------------------------------------------------MSVRVAINGFGRIGRNILRAIIES--GRQDIEVVAL-------NDLGSVETNAHLLRYDSVHGCFPGTVQV--VGDAIDI---LIKVFAERDPAQLPWKALDIDIAL--ECTGIFTARDKASAHLDA-GAKRVLVSAPSEGADLTVVYGVNHQFLSKEHHVISNASCTTNCLAPVAQVLHNTVGIEKGFMTTIHSYTGDQPVLDTMHRDLYRARAAALSMIPTSTGAAKAVGLVLPELKGLLDGVSIRVPTPNVSVVDLTFTAKRSTTIEEINTAIRTAAQGS-LKGILDY-TDEKLVSCDFNHNPHSAIFHNDQTKVIDGQLCRVLVWYDNEWGFS-------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3L0D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -160951 for 2639 contacts (-61.0/contact) +
2D Compatibility (PS) -34676 + (NN) -17948 + (LL) 10060
1D Compatibility (HY) -24000 + (ID) 6400
Total energy: -233915.0 ( -88.64 by residue)
QMean score : 0.513
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