Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIRLEKVNKWYGAYHALADVDEQVGRGEVVVVCGPSGSGKSTLIRTLNRLEPIQGGRILIDGQDIHAPGLDLNRFRSHIGFVFQQFNLFPHLNVLDNCTLASLRLRGLKPAEARRQAMA---LLE-RVGLADKAAAFPARLSGGQQQRVAIARALAMEPPLMLFDEPTSALDPEMVGEVLLVMRDLARDGMTMVVVTHEMGFAHDVADRVLFMDAGRVLERASPDDFFNRPQHPRARKFLADIRTPFAQPL
1XEF Chain:D ((19-229))
----------------LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALA--DPNWLRRQVGVVLQD-NVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAARLSTVKN-ADRIIVMEKGKIVEQGKHKELLSEPE-------------------
General information:
TITO was launched using:
RESULT:
Template:
1XEF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118185 for 1546 contacts (-76.4/contact) +
2D Compatibility (PS) -22146 + (NN) -7174 + (LL) 3120
1D Compatibility (HY) -14400 + (ID) 3600
Total energy: -162385.0 ( -105.04 by residue)
QMean score : 0.368
(partial model without unconserved sides chains):
PDB file :
Tito_1XEF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XEF-query.scw
PDB file :
Tito_Scwrl_1XEF.pdb
: