Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSNPQYPTRLPCG-SRVLDLARPHVMGILNVTPDSFSDGGRYDRLDDALRHAERMVLEGATLIDVGGESTRPGARSVSPTEELERVAPVVERIARELDVVISVDTSTPAVMRETARLGAGLINDVRSLQRDGALDAAVDSGLAVCLMHMRGEPQTMQDAPAYQDVVAEVGAFLQERVDACVAAGIDRERLLLDPGFG---FAKTLEHNLVLFRHLQALHGLGLPLLVGVSRKSMIGKVLGREVDERLYGSLALAALALAKGARIIRVHDVAATVDVMRMISAVEMAD |
3TR9 Chain:A ((12-293)) | ------SFHLRLRDDKRIVFSEPAVMGIINVSPNSFYHPH--LDLNSALRTAEKMVDEGADILDIGGEATNPFV-SPSTQIELDRLLPVIDAIKKRFPQLISVDTSRPRVMREAVNTGADMINDQRALQLDDALTTVSALKTPVCLMHFPSETRKPGS-TTHFYFLQSVKKELQESIQRCKKAGISEDRIIIDPGFGQGNYGKNVSENFYLLNKLPEFVAMGLPVLSGWSRKSMIGDVLNQPPENRLFGSIAADVLAVYHGASIIRTHDVKATREAIKIATYTRSVD |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TR9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -181178 for 2346 contacts (-77.2/contact) +
2D Compatibility (PS) -30077 + (NN) -18556 + (LL) 608
1D Compatibility (HY) -21600 + (ID) 5700
Total energy: -256503.0 ( -109.34 by residue)
QMean score : 0.577
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