Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNDFSKWTGQVALISGAGSELGIGFAIARRLAREGVRLLITASSER-IRQRAEELSACGHDVRAASADLTDEAQVQGLLDWAEAQWGRVDILVNNAGMAQLDSAEPFSAVEATSLRD--WQLSLSRNLTSAFLLTRGLLP--GMRERGYGRIVNVASTTGTRGSNPGEAAYSAAKAGLVGWSMGLALEVAKSGITVNSVAPGWIAT--ASSTAEER-------------QAALASPSGRAGRPEEVAAAVAFLASPEASFVNGELLVVDGGNCLIENKRS
1W4Z Chain:A ((27-277))
---------EVALVTGATS--GIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVDVLVNNAG-------RPGGGATA-ELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHA-APYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVPIGRYVQPSEVAEMVAYLIGPGAAAVTAQALNVCGG---------
General information:
TITO was launched using:
RESULT:
Template:
1W4Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122592 for 1985 contacts (-61.8/contact) +
2D Compatibility (PS) -25894 + (NN) -15360 + (LL) 1896
1D Compatibility (HY) -16000 + (ID) 5050
Total energy: -183000.0 ( -92.19 by residue)
QMean score : 0.560
(partial model without unconserved sides chains):
PDB file :
Tito_1W4Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W4Z-query.scw
PDB file :
Tito_Scwrl_1W4Z.pdb
: