Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADSFSLNDALAGSGNPNPQGYPGAWGNQPGAGGYPGAAYPGAYPGQAPPGAYPGQAPPGAYPGQAPPSAYPGPTAPGAYPGPTAPGAYPGQPAPGAFPGQPGAPGAYPQCSGGYPAAGPYGVPAGPLTVPYDLPLPGGVMPRMLITIMGTVKPNANRIVLDFRRGNDVAFHFNPRFNENNRRVIVCNTKQDNNWGKEERQSAFPFESGKPFKIQVLVEADHFKVAVNDAHLLQYNHRMKNLREISQLGISGDITLTSANHAMI
4LBM Chain:A ((1-139))
-----------------------------------------------------------------------------------------------------------------------------GPLIVPYNLPLPGGVVPRMLITILGTVKPNANRIALDFQRGNDVAFHFNPRFNENNRRVIVCNTKLDNNWGREERQSVFPFESGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRVKKLNEISKLGISGDIDLTSASYTMI
General information:
TITO was launched using:
RESULT:
Template:
4LBM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97866 for 1015 contacts (-96.4/contact) +
2D Compatibility (PS) -14832 + (NN) -2772 + (LL) -2772
1D Compatibility (HY) -18400 + (ID) 6050
Total energy: -142692.0 ( -140.58 by residue)
QMean score : 0.339
(partial model without unconserved sides chains):
PDB file :
Tito_4LBM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LBM-query.scw
PDB file :
Tito_Scwrl_4LBM.pdb
: