Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEDTKESNVKTFCSKNILAILGFSSIIAVIALLAVGLTQNKALPENVKYGIVLDAGSSHTSLYIYKWPAEKENDTGVVHQVEECRVKGPGISKFVQKVNEIGIYLTDCMERAREVIPRSQHQETPVYLGATAGMRLLRMESEELADRVLDVVERSLSNYPFDFQGARIITGQEEGAYGWITINYLLG---KFSQKTRWFSIVPYETNNQETFGALDLGGASTQVTFVPQNQTIESPDNALQFRLYGKDYNVYTHSFLCYGKDQALWQKLAKDIQVASNEILRDPCFHPGYKKVVNVSDLYKTPCT--KRFEMTLPFQQFEIQGIGNYQQCHQSILELFNTSYCPYSQCAFNGIFLPPLQGDFGAFSAFYFVMKFL----NLTSEKVSQ-EKVTEMMKKFCAQPWEEIKTSYAGVKEKYLSEYCFSGTYILSLLLQGYHFTADSWEHIHFIGKIQGSDAGWTLGYMLNLTNMIPAEQPLSTPLSHSTYVFLMVLFSLVLFTVAIIGLLIFHKPSYFWKDMV |
| 4CD3 Chain:A ((31-448)) | --------------------------------------------PALKYGIVLDAGSSHTSMFVYKWPADKENDTGIVGQHSSCDVQGGGISSYANDPSKAGQSLVRCLEQALRDVPRDRHASTPLYLGATAGMRLLNLTSPEATARVLEAVTQTLTQYPFEFRGARILSGQDEGVFGWVTANYLLENFIKYGWVGRW--IRP----RKGTLGAMDLGGASTQITFETTSPS-EDPGNEVHLRLYGQHYRVYTHSFLCYGRDQILLRLLASALQIHRFH----PCWPKGYSTQVLLQEVYQSPCTMGQRP-----SAIVSLSGTSNATLCRDLVSRLFNISSCPFSQCSFNGVFQPPVAGNFIAFSAFYYTVDFLTTVMGLPVGTLKQLEEATEIT---CNQTWTELQARVPGQKTR-LADYCAVAMFIHQLLSRGYHFDERSFREVVFSKKAADTAVGWALGYMLNLTNLIPADLP------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4CD3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -244640 for 3462 contacts (-70.7/contact) +
2D Compatibility (PS) -42995 + (NN) -19761 + (LL) 9604
1D Compatibility (HY) -37200 + (ID) 9950
Total energy: -344942.0 ( -99.64 by residue)
QMean score : 0.426
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