Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAIGNWTEISEFILMSFSSLPTEIQSLLFLTFLTIYLVTLKGNSLIILVTLADPMLHSPMYFFLRNLSFLEIGFNLVIVPKMLGTLLAQDTTISFLGCATQMYFFFFFGVAECFLLATMAYDRYVAICSPLHYPVIMNQRTRAK-LAAASWFPGFPVATVQTTWLFSFPFCGTNKVNHFFCDSPPVLKLVC--ADTALFEIYAIVGTILVVMIPCLLILCSYTRIAAAILK---------IPSAKGK---HKAFSTCSSHLLVVSLF-------YISSSLTYFWPKSNNSPESKKLLSLSYTVVTPMLNPIIYSLRNSEVKNALSRTFHKVLALRNCIP |
| 3VGA Chain:A ((6-303)) | ------------------------SSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIP--FAITISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTG-TRAKGIIAICWVLSFAIG---LTPMLGWNNCGQ-------SQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFR----QTFRKIIRSHVL-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VGA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -236201 for 1989 contacts (-118.8/contact) +
2D Compatibility (PS) -26984 + (NN) -4784 + (LL) 3732
1D Compatibility (HY) -26000 + (ID) 3350
Total energy: -293587.0 ( -147.61 by residue)
QMean score : 0.313
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