Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNPANHSQVAGFVLLGLSQVWELRFVFFTVFSAVYFMTVVGNLLIVVIVTSDPHLHTTMYFLLGNLSFLDFCYSSITAPRMLVDLLSGNPTISFGGCLTQLFFFHFIGGIKIFLLTVMAYDRYIAISQPLHYTLIMNQTVCALLMAASWVGGFIHSIVQIALTIQLPF--CGPDKLDNFYCDVPQLIKLAC--TDTFVLELLMVSNNGLVTLMCFLVLLGSYTALLVMLRSHSREGRS------KALST------CASHIAVVTLIFVPC---IYVYTRPFRTFPMDKA--------VSVLYTIVTPMLNPAIYTLRNKEVIMAMKKLWR----RKKDPIGPLEHRPLH |
| 3VGA Chain:A ((8-308)) | -------------------------VYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIPFAIT--ISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSF-----AIGLTPMLGWNNCGQ-------SQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHI-INCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVL--------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VGA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -265573 for 1928 contacts (-137.7/contact) +
2D Compatibility (PS) -26448 + (NN) -7313 + (LL) 3252
1D Compatibility (HY) -23600 + (ID) 3500
Total energy: -323182.0 ( -167.63 by residue)
QMean score : 0.321
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