Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----------MSMNNSKQLVSPAAALLSNTTCQTENRLSVFFSVIFMTVGILSNSLAIAILMKAYQRFRQKSKASFLLLASGLVITDFFGHLINGAIAVFVYASDKEWIRFDQSNVLCSIFGICMVFSGLCPLLLGSVMAIERCIGVTKPIFHSTKITSKHVKMMLSGVCLFAVFIALLPILGHRDYKIQASRTWCF--YNTEDIKDWEDRFYLLLFSFLGLLALGVSLLCNAITGITLLRVKFKSQQHRQGRSHHLEMVIQLLAIMCVSCICWSPFLVTMANIGINGNHSLETCETTLFALRMATWNQILDPWVYILLRKAVLKNLYKLASQCCGVHVISLHIWELSSIKNSLKVAAISESPVAEKSAST |
| 1F88 Chain:A ((1-348)) | MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQH-----KKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGY----FVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKP-MSNFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTV-KEAAASATTQKAEKEVTRMVIIMVIAFLI---CWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSA-VYNPVIYIMMNKQFRNCMVTTLCC---------------GKNPSTTVSKTETSQVAPA---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1F88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -254905 for 2671 contacts (-95.4/contact) +
2D Compatibility (PS) -33233 + (NN) -10240 + (LL) 3356
1D Compatibility (HY) -18000 + (ID) 3000
Total energy: -316022.0 ( -118.32 by residue)
QMean score : 0.339
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