Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVGDTLKLLSPLMTRYFFLLFYSTDSSDLNENQHPLDF--DEMAFGKVKSGISFLIQTGVGILGNSFLLCFYNLILFTGHKLR-PTDLILSQLALANSMVLFFKGIPQTMAAFGLKYLLNDTGCKFVFYYHRVGTRVSLSTICLLNGFQAIKLNPSICRWMEIKIRSPRFIDFCCLLCWAPHVLMNASVLLLVNGPLNSKNSSAKNNYGYCSYKASKRFSSLHAVLYFSPDFMSLGFMVWASGSMVFFLYRHKQQVQHNHSNRLSCRPSQEARATHTIMVLVSSFFVFYSVHSFLTIWTTVVANPGQ----WIVTNSVLVASCFPARSPFVLIMSDTHISQFCFACRTRKTLFPNLVVMP-------- |
| 1F88 Chain:A ((1-348)) | --------MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQH------KKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVL----AIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPLV---GWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHF---------IIPLIVIFFCYGQLVFTVKEAAASATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPSTTVSKTETSQVAPA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1F88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -199885 for 2708 contacts (-73.8/contact) +
2D Compatibility (PS) -32192 + (NN) 577 + (LL) 2256
1D Compatibility (HY) -20800 + (ID) 2450
Total energy: -252494.0 ( -93.24 by residue)
QMean score : 0.203
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