Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEMTKLFSYIVIKNVYYPQVSFGISANTFLLLFHIFTFAYTHRLKPIDMTISHLPLIHILLLFTQAILVSSDLFESWNIQNNDLKCKIITFLNRVMRGVSICTTCLLSVLQAITISPSTSFLEKFKHISANHTLGFILFSWVLNMFITNNLLLFIVPTPNRIGASLLFVTEHCYVLPMSYTHRSLFFILMVLRDVIFIGLMVLSSGYG
3ODU Chain:A ((46-203))
------FNKIFLPTIYSIIFLTGIVGNGLVILVMGY---QKKLRSMTDKYRLHLSVADLLFVIT--LPFWAVDAVANWYF-GNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQ---RPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEA-------DDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCI
General information:
TITO was launched using:
RESULT:
Template:
3ODU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106445 for 1064 contacts (-100.0/contact) +
2D Compatibility (PS) -15831 + (NN) 3114 + (LL) 2224
1D Compatibility (HY) -6400 + (ID) 1150
Total energy: -124488.0 ( -117.00 by residue)
QMean score : 0.145
(partial model without unconserved sides chains):
PDB file :
Tito_3ODU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ODU-query.scw
PDB file :
Tito_Scwrl_3ODU.pdb
: