Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSGNVLLTFCSNSGYLRSDMNAVKNLVIWLLIIVITAMFIDSQKDRLRNRFLSTFLPYRGRIQDSRSVEFTKSYDGHFYIQAQVNGHNITFLLDTGATDIVLSQKDALYAGI-KLQDIQDFKIYETAKGQIRAGVVQIPQIKI-GNFLINDVQASVNTHSMPHSLLGMSFLKYFHFTIRGNKLILYCNSTY
3S8I Chain:A ((25-135))
------------------------------------------------------------------------------LYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKG---QRIIGRVHLAQIQIEGDFL--QCSFSILEDQPMDMLLGLDMLRRHQCSIDLKKNVLVIGTTG
General information:
TITO was launched using:
RESULT:
Template:
3S8I.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90669 for 777 contacts (-116.7/contact) +
2D Compatibility (PS) -11227 + (NN) -991 + (LL) 5668
1D Compatibility (HY) -7200 + (ID) 1650
Total energy: -106069.0 ( -136.51 by residue)
QMean score : 0.397
(partial model without unconserved sides chains):
PDB file :
Tito_3S8I.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3S8I-query.scw
PDB file :
Tito_Scwrl_3S8I.pdb
: