Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNVSQLKRRVAIQLILYLLLSIGLIGLLMYAVIYNRKVYNKNQSAINEIHSINLQITDVQKKEVVLDKNLDLWQKISSSNLHSSRYITNLNFELGKLYKKYCILEPEISISIPEEIELYNKSEHTKVIKSEVTLNLSSISDKHIFLFLQSVPSLPGYVMIKSLILNKERNIDTATMNQILNGNMIETVRANIVFDWYTILSR
2RJZ Chain:A ((40-135))
----------------------------------------------------------------------------------SDTEVPGLLEDITRTGLGSGLEFEEIKLLPEVAQQFY--------IELPIQISVV-GGYHDLATFVSGVSSLPRIVTLHDFEIKPVAPG------------STSKLRMSILAKTYRYN--
General information:
TITO was launched using:
RESULT:
Template:
2RJZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75716 for 636 contacts (-119.1/contact) +
2D Compatibility (PS) -10182 + (NN) -2248 + (LL) 8628
1D Compatibility (HY) -3200 + (ID) 750
Total energy: -83468.0 ( -131.24 by residue)
QMean score : 0.342
(partial model without unconserved sides chains):
PDB file :
Tito_2RJZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RJZ-query.scw
PDB file :
Tito_Scwrl_2RJZ.pdb
: