Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MFSSKPKSKFMLSIGEEGTILLYFKNNT--LNKRY--FVKD-----KNDKAVFDLNSCLSS------NKKAPLYLVLNHADQNYSLQLIPRVNRISAYLSAKTKMEHLTRNN-DISSVL-LVEKPNK--LNQNWYYLLVSSKAKRLVEYWLNVFIGIGSNFKGILMFPIEINNIAK-KVFYNDLNNWKIIVVATKTGGYRQVVFKENKMIFTRLVPFTNDNLPGIIAGGIYQEVQNTIRSLTKFGFKRNDPIDLCMVVQEDIKTSLSVINFSENSVNILTPHELGRLLGSELAVSEKDSFCDTIILFHSFKNKPIAVFYTKETKEFYLLNYFHLNSPRIFLYFTSILITINILCLLNLHSNFNVADNLSAKKEALDKQLAKLSQSYNVKKIDEVYDFININNILLKMEYSPLTQVKYVEKLKVPDVELQSFEWNYNEAKNYITTTLRFNFQPGKNVSYQYKELQKKLNNNFRTYDISISSLPATEEENIPINVKIGEAM |
| 2YCH Chain:A ((11-221)) | ----PRVEALGLEIGASALKLVEVSGNPPALKALASRPTPPGLLMEGMVAEPAALAQEIKELLLEARTRKRYVVTALSNLAVILRPIQVPKMPLKEMEEAVRWEAERYIPFPIEVVLDFAPLTPLSEVQEGEQVQVM-VAAARQEAVAGVLEALRGAGLVPVVLDVKPFAGLYPLEARLAE--EPDRVFLVLDIGAESTSLVLLRGDKPLAVRVLTLSGKDFTEAIARSFNLDLLAAEEVKRTYGRIYDAIRPVLVELTQELRRSLEFFRIQLSPEVGYLLGGGSKLRGLASLLTDTLGVNLEPVNPWEAVAVDPKRFESEQLQEIGPEFAVALGLALRGVEP------------------------------------------------------------------------------------------------------------------------------------------------------------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2YCH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -77802 for 1306 contacts (-59.6/contact) +
2D Compatibility (PS) -20452 + (NN) -5188 + (LL) 10968
1D Compatibility (HY) -1600 + (ID) 1050
Total energy: -95124.0 ( -72.84 by residue)
QMean score : 0.450
|
|
|