Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKPKVLATKLTESFNVKLANSLDDMRESTDLETKVFDLNSKMKNMLSEYKSKGLNYQDVCILNVADQFRGFKENIKILLKLILKGKLDAHYNPG-CSKETLKNYFFFDCFHSTAEPHHKVGNEIYA
4Q9M Chain:A ((133-178))
------------------------------------------------------------LILNFALNYGGRAE-ITQALKLISQDVLDAKINPGDITEELIGNYLFTQHLPKDLRDPDLIIRTSGE
General information:
TITO was launched using:
RESULT:
Template:
4Q9M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11867 for 202 contacts (-58.7/contact) +
2D Compatibility (PS) -4777 + (NN) -3680 + (LL) 3928
1D Compatibility (HY) -4800 + (ID) 1050
Total energy: -22246.0 ( -110.13 by residue)
QMean score : 0.420
(partial model without unconserved sides chains):
PDB file :
Tito_4Q9M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Q9M-query.scw
PDB file :
Tito_Scwrl_4Q9M.pdb
: