Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKSLYIKTYGCQMNVYDSILMENIIKPLGFNVVNDVEKADLVILNTCHIREKAAEKLYSELGKIHSSRKNKEITIVAAGCVAQAEGEEIFRRAPFVDIVVGPQSITTLPELIVKASRSKGHVINTDFPKVMKFDRLSDECYGNSQGSSAFLSIQEGCDKFCTFCVVPYTRGAEYSRPVNEIFREALKLVANGAKEINLLGQNVNAYHGEYEGEVWDLGKLISHIAKIEKLERIRYTTSHPRDMHESLYLAHAEAPKLMPFIHLPVQSGSNKILRAMNRKYTTEEYLEIIERFRKLKPKIEFSSDFIVGFPGETEKDFEGTIKLVERVRYAQAYSFKYSTRPGTPGAERKDQVPEKVKTERLLHLQKLINKQQLEFNQSMVGKTIPVLFSNKKGKHQNQIIGKSPYM-----QSVCIDDPEDKCRDKIVNVRILEAWQNSLLGRELQE- |
4JC0 Chain:A ((2-433)) | --RVGIKVLGCPKNEADCEVLAGVLREGGHEIVFDVKDADVVVLDTCAFIEDAKRESIDEIFSFVDAKDQYGYKLVVKGCLVQRYYEELKKEIPEVDQWIGVADPEEIANAIETDLVPD----------------RYRKRIDLEERPYAYVKISDGCDRGCTFCSIPSFKGSLRSRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQ-ALPDLLRRLNSLNGEFWIRVMYLHPDHLTEEIISAMLELDKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGAFVYSDEEGTVAFNLKEKVDPEMAKRRQEELLLLQAEISNSRLDRFVGKKLKFLVEGKEG---KFLVGRTWTEAPEVDGVVFVRGKGK--IGDFLEVVIKEHDEYDMWGSVILEH |
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General information:
TITO was launched using:
| RESULT:
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Template: 4JC0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -155123 for 3437 contacts (-45.1/contact) +
2D Compatibility (PS) -44857 + (NN) -23950 + (LL) 1616
1D Compatibility (HY) -26000 + (ID) 5750
Total energy: -254064.0 ( -73.92 by residue)
QMean score : 0.436
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