Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLEILNVTLLLLLLIVAIFIVLSNHLVTSGVLMCAFSSLIALIYLIMNAPDVAITEASVGAGLSTVFTFAALSLIKNHKVDLSHNPIILFFMLFLAICLSHFMTQLPDFGSYDAPIHSHVAPYYIENTKKAVGIPNIVTAVLAGFRGYDTFGETIVVFTAALCITLILKEEKEND
3ZWB Chain:A ((130-172))
--------------------------------------------------------------------------------------------------------------------------YRIANAKARVGLPAVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEA
General information:
TITO was launched using:
RESULT:
Template:
3ZWB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21327 for 198 contacts (-107.7/contact) +
2D Compatibility (PS) -4146 + (NN) 3314 + (LL) 11504
1D Compatibility (HY) -2000 + (ID) 750
Total energy: -13405.0 ( -67.70 by residue)
QMean score : 0.131
(partial model without unconserved sides chains):
PDB file :
Tito_3ZWB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ZWB-query.scw
PDB file :
Tito_Scwrl_3ZWB.pdb
: