Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------------MIEV-----SVHYGNVDRAFPVLKKTIQKEGRGMKMKKQYHEKKSEKRAKKKAEAKKKKRQQESRRQRYGW-------
2KK4 Chain:A ((1-95))
QGHMDLICMYVFKGEESFGESIDVYGDYLIVKVGTEFLAVP--KKSIKSVEDGRIVIGEFDEEEARELGRKWLEEKSKPVTLEELKS-YGFGEEGEGS
General information:
TITO was launched using:
RESULT:
Template:
2KK4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 21502 for 315 contacts (68.3/contact) +
2D Compatibility (PS) -6613 + (NN) -707 + (LL) 468
1D Compatibility (HY) -2800 + (ID) 900
Total energy: 10950.0 ( 34.76 by residue)
QMean score : 0.371
(partial model without unconserved sides chains):
PDB file :
Tito_2KK4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KK4-query.scw
PDB file :
Tito_Scwrl_2KK4.pdb
: