Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKGKEEQFSFTSENLKKAKKFIEVYPKGKEGSAVMPLLYLVQEQCGWVPEPAMCYVADMLHIPHIRVYEVANFYTMYNLKPVGKYLIRVCRTTPCWLCSSEEILNTFKKKLGINIGETTKDNLFTLKEVECFGACVNAPVVQINNDFY-ENLTPEKVESIIAELSNK
3IAM Chain:B ((18-157))
------------------------YPPEGRRAAIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVMGVASFYSYYQFVPTGKYHLQVCATLSCKLAGAEELWDYLTETLGIGPGEVTPDGLFSVQKVECLGSCHTAPVIQVNDEPYVECVTRARLEALLAGLRAG
General information:
TITO was launched using:
RESULT:
Template:
3IAM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101145 for 974 contacts (-103.8/contact) +
2D Compatibility (PS) -15173 + (NN) -5421 + (LL) 1984
1D Compatibility (HY) -13200 + (ID) 2700
Total energy: -135655.0 ( -139.28 by residue)
QMean score : 0.477
(partial model without unconserved sides chains):
PDB file :
Tito_3IAM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IAM-query.scw
PDB file :
Tito_Scwrl_3IAM.pdb
: