Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDIINETKSRMQKSIESLSRELANISAGRANSNLLNGVTVDYYGAPTPVQQLASINVPEARLLVISPYDKTSVADIEKAIIAANLGVNPTSDGEVIRIAVPALTEERRKERVKDVKKIGEEAKVSVRNIRRDMNDQLKKDEKNGDITEDELRSGTEDVQKATDNSIKEIDQMIADKEKDIMSV
4GFQ Chain:A ((29-209))
---VLKFSNEKMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAKNKEKEIMEV
General information:
TITO was launched using:
RESULT:
Template:
4GFQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49014 for 1271 contacts (-38.6/contact) +
2D Compatibility (PS) -19867 + (NN) -6588 + (LL) 104
1D Compatibility (HY) -18800 + (ID) 5650
Total energy: -99815.0 ( -78.53 by residue)
QMean score : 0.646
(partial model without unconserved sides chains):
PDB file :
Tito_4GFQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GFQ-query.scw
PDB file :
Tito_Scwrl_4GFQ.pdb
: