Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MYYHQPLLLTPGPTPVPDAIMREIQAPMVGHRSKDFEDIAQQAFQGLKPIFGSQNDVLILTS-SGTSVLEASMLNIVNPEDHFVVIVSGAFGNRFKQIAQTYYKNVHIYDVTWGEAVDVKDFINYLSTLDVEVKAVFSQYCETSTTVLHPIHELGNAINQFNSNIYFVVDGVSCIGAVDVDINKDKIDVLVSGSQKAIMLPPGLAFVAYSHRAKERFKEVTT--PKFYLDLN---KYISSQADNSTPFTPNVSLFRGVNAYVETVKAEGFNHVIARHYAIRNALRSALKALDLTLLVNDKDASPTVTAFK-PNTNEVKIIKDELKNRFKITIAGGQGHLKGQILRIGHMGKISPFD-ILSVVSALEIILTEHRKVNYIGKGISKYMEVIHEAI |
| 1VJO Chain:A ((36-392)) | ------LLLGPGPSNAHPSVLQAMNVSPVGHLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALETHRPAILALV--HAETSTGARQPLEGVGELCREFGT--LLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSE--RVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVL------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VJO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -260433 for 3120 contacts (-83.5/contact) +
2D Compatibility (PS) -37825 + (NN) -18722 + (LL) 2728
1D Compatibility (HY) -22400 + (ID) 5050
Total energy: -341702.0 ( -109.52 by residue)
QMean score : 0.528
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