Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKKVAIILANEFEDIEYSSPKEALENAGFNTVVIGDTANSEVVGKHG-EKVTVDVGIAEAKPEDYDALLIPGGFSPDHLRGDTEGRYGTFAKYFTKNDVPTFAICHGPQILIDTDDLKGRTLTAVLNVRKDLSNAGAHVVDES-VVVDNNIVTSRVPDDLDDFNREIVKQLQ
1OI4 Chain:A ((22-192))
LSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGD--NRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLG
General information:
TITO was launched using:
RESULT:
Template:
1OI4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82305 for 1503 contacts (-54.8/contact) +
2D Compatibility (PS) -18998 + (NN) -6937 + (LL) 156
1D Compatibility (HY) -12400 + (ID) 4050
Total energy: -124534.0 ( -82.86 by residue)
QMean score : 0.627
(partial model without unconserved sides chains):
PDB file :
Tito_1OI4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OI4-query.scw
PDB file :
Tito_Scwrl_1OI4.pdb
: