Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----MKDLTMLLDELKDMSFFNKGDICLIGCSTSEVIGEKIGTVGSMEVAETIFNALDVVSKETGVTFAFQGCEHINRAITIEKSQYNPLTMEEVSVVPDVHAGGSLATYAFQHMKDPIVVEHIT--VPCGIDIGQTLIGMHIKHVCVPVRTSVKQVGQAIVTIATSRPKKIGGERAKYK-------------
1V8D Chain:A ((40-232))
MEGIRRAAQRAAEEFLQAFPMAPGSLFVLGGSTSEVLG----TRPSLEAAHAVLEGLLPPLLERGVHVAVQACEHLNRALVVERETARAFGKEEVAVFPHPKAGGAKATAAFLRFRDPVMVESLKAQAHGGMDIGGVLIGMHLRPVAVPLRLSVRKIGEAVLLAAKTRPKLVGGARAVYTREEMLKKLEEFLP
General information:
TITO was launched using:
RESULT:
Template:
1V8D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -160011 for 1410 contacts (-113.5/contact) +
2D Compatibility (PS) -18447 + (NN) -5106 + (LL) 200
1D Compatibility (HY) -9200 + (ID) 3400
Total energy: -195964.0 ( -138.98 by residue)
QMean score : 0.640
(partial model without unconserved sides chains):
PDB file :
Tito_1V8D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V8D-query.scw
PDB file :
Tito_Scwrl_1V8D.pdb
: