Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTMTDPIADMLTRVRNANMVRHEKLELPASNIKKEIAEILKSEGFIKNVEYVEDDKQGVLRLFLKYGQNDERVITGLKRISKPGLRVYAKASEMPKVLNGLGIALVSTSEGVITDKEARKRNVGGEIIAYVW
4PDB Chain:A ((27-155))
---TDPIADMLTRIRNANMVRHEKLEVPASKIKKEIAELLKREGFIRDVEYIEDNKQGILRIFLKYGANNERVITGLKRISKPGLRVYAKADEVPRVLNGLGIALVSTSKGVMTDKDARQLQTGGEVVAYVW
General information:
TITO was launched using:
RESULT:
Template:
4PDB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61658 for 940 contacts (-65.6/contact) +
2D Compatibility (PS) -13736 + (NN) -3961 + (LL) 468
1D Compatibility (HY) -17200 + (ID) 5200
Total energy: -101287.0 ( -107.75 by residue)
QMean score : 0.651
(partial model without unconserved sides chains):
PDB file :
Tito_4PDB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PDB-query.scw
PDB file :
Tito_Scwrl_4PDB.pdb
: