Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLSQEFFNSFITIYRPYLKLAEPILEKHNIYYGQWLILRDIAKHQPTTLIEISHRRAIEKPTARKTLKALIENDLITVENSLEDKRQKFLTLTPKGHELYEIVCLDVQKLQQAVVAKTNISQDQMQETINVMNQIHEILLKEAHND
4EM2 Chain:A ((33-175))
MLSQEFFNSFITIYRPYLKLTEPILEKHNIYYGQWLILRDIAKHQPTTLIEISHRRAIEKPTARKTLKALIENDLITVENSLEDKRQKFLTLTPKGHELYEIVCLDVQKLQQAVVAKTNISQDQMQETINVMNQIHEILLKEA---
General information:
TITO was launched using:
RESULT:
Template:
4EM2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62308 for 875 contacts (-71.2/contact) +
2D Compatibility (PS) -15175 + (NN) -4583 + (LL) -112
1D Compatibility (HY) -21600 + (ID) 7100
Total energy: -110878.0 ( -126.72 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_4EM2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EM2-query.scw
PDB file :
Tito_Scwrl_4EM2.pdb
: