Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------------------MMGYIILFFLAGPVILGVGNLVIGPIF-NKQTPFRVQVRS-FVVG---SMIYLI------LATIGYFLLLQGKL--------------
3F40 Chain:A ((2-112))
KTQITTRDLVLEFIHALNTENFPAAKKRLNENFTFNGPM----GHREGSERYMNDEKKFKYVVHKMFEEGNDVCLIYDINMNGKTIAASGLYHLEKGEITSLHVYFDPRPLFE
General information:
TITO was launched using:
RESULT:
Template:
3F40.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36430 for 289 contacts (-126.1/contact) +
2D Compatibility (PS) -6532 + (NN) -978 + (LL) 400
1D Compatibility (HY) 4000 + (ID) 250
Total energy: -39790.0 ( -137.68 by residue)
QMean score : -0.044
(partial model without unconserved sides chains):
PDB file :
Tito_3F40.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F40-query.scw
PDB file :
Tito_Scwrl_3F40.pdb
: