Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNLAKRILQGEQLTKETVLKIYEDTNIDTLDLLNEAY-ILRKHYFGKKVKLNMILNAKSGICPENCGYCGQSRDIK---QKQRYALIPEEQIIDGAKVAHDNHIGTYCIVMSGRGPSDKEVDHISNTVRTIKSQHPQLKICACLGLTNDEQAKKLKSAGVDRYNHNINTSENYHDNVVTTHSYKDRTDTIELMKANNISPCSGVICGMGESNQDIVDMAFALKEMDA--DSIPINFLHPIKGTKFGSMDDLTPMKCLRIVALFRLINPTKEIRIAGGREVNLRSLQPLALKA-ANSIFVGDYLITGGQPNQ-LDYDMINDLGFEIDYDTCENKENKNDVSRAN |
1R30 Chain:B ((29-333)) | --------------RWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAER--LMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMG--LEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGL-------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1R30.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -130561 for 2575 contacts (-50.7/contact) +
2D Compatibility (PS) -32538 + (NN) -16102 + (LL) 2312
1D Compatibility (HY) -20000 + (ID) 5000
Total energy: -201889.0 ( -78.40 by residue)
QMean score : 0.430
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